📡🧬sig2dna_core
Contents:
📡🧬 sig2dna
🔄 Pseudo-Inverse Reconstruction of Signals Using Ricker Wavelets
📡🧬 Blind Deconvolution of 2D Signals using DNA Representations
API Reference
📡🧬sig2dna_core
Index
Index
_
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A
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B
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C
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D
|
E
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F
|
G
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H
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I
|
J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
|
Y
_
__getitem__() (sig2dna_core.signomics.DNAsignal method)
_auto_scale_enabled (sig2dna_core.signomics.SinusoidalEncoder attribute)
_decode_residual_tolerance (sig2dna_core.signomics.SinusoidalEncoder attribute)
_E_symbol (sig2dna_core.signomics.DNAsignal_collection attribute)
_history (sig2dna_core.signomics.signal attribute)
_last_input_length (sig2dna_core.signomics.SinusoidalEncoder attribute)
_last_input_type (sig2dna_core.signomics.SinusoidalEncoder attribute)
_pairwiseEntropyDistance() (sig2dna_core.signomics.DNAsignal method)
_pairwiseJaccardMotifDistance() (sig2dna_core.signomics.DNAsignal method)
_pairwiseJensenShannonDistance() (sig2dna_core.signomics.DNAsignal method)
_pairwiseLevenshteinDistance() (sig2dna_core.signomics.DNAsignal method)
_PE_m (sig2dna_core.signomics.DNAsignal_collection attribute)
_PE_t (sig2dna_core.signomics.DNAsignal_collection attribute)
_previous (sig2dna_core.signomics.signal attribute)
_scale (sig2dna_core.signomics.SinusoidalEncoder attribute)
_vtm (sig2dna_core.signomics.DNAsignal_collection attribute)
_vtm_full (sig2dna_core.signomics.DNAsignal_collection attribute)
A
add() (sig2dna_core.signomics.peaks method)
add_noise() (sig2dna_core.signomics.signal method)
align() (sig2dna_core.signomics.DNAstr method)
align_with() (sig2dna_core.signomics.DNAsignal method)
(sig2dna_core.signomics.signal method)
aligned_code (sig2dna_core.signomics.DNAstr property)
aligned_with (sig2dna_core.signomics.DNAstr attribute)
alignment_stats (sig2dna_core.signomics.DNAstr property)
angle_difference() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
append() (sig2dna_core.signomics.signal_collection method)
apply_baseline_filter() (sig2dna_core.signomics.DNAsignal static method)
apply_poisson_baseline_filter() (sig2dna_core.signomics.signal method)
as_dict() (sig2dna_core.signomics.peaks method)
B
backup() (sig2dna_core.signomics.signal method)
best_dimension() (sig2dna_core.signomics.DNApairwiseAnalysis method)
C
cluster() (sig2dna_core.signomics.DNApairwiseAnalysis method)
codebook (sig2dna_core.signomics.DNAsignal attribute)
codes (sig2dna_core.signomics.DNAsignal attribute)
,
[1]
codesfull (sig2dna_core.signomics.DNAsignal attribute)
,
[1]
color (sig2dna_core.signomics.signal attribute)
combine_embeddings() (sig2dna_core.signomics.DNAsignal_collection method)
complex_distance() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
compute_cwt() (sig2dna_core.signomics.DNAsignal method)
,
[1]
compute_linkage() (sig2dna_core.signomics.DNApairwiseAnalysis method)
coords (sig2dna_core.signomics.DNApairwiseAnalysis attribute)
copy() (sig2dna_core.signomics.peaks method)
(sig2dna_core.signomics.signal method)
D
D (sig2dna_core.signomics.DNApairwiseAnalysis attribute)
d (sig2dna_core.signomics.DNAsignal_collection attribute)
d_model (sig2dna_core.signomics.SinusoidalEncoder attribute)
decode() (sig2dna_core.signomics.SinusoidalEncoder method)
,
[1]
decode_dna() (sig2dna_core.signomics.DNAsignal method)
deconvolve_latent_sources() (sig2dna_core.signomics.DNAsignal_collection method)
dimension_variance_curve() (sig2dna_core.signomics.DNApairwiseAnalysis method)
dimensions (sig2dna_core.signomics.DNApairwiseAnalysis attribute)
disable_fullhistory() (sig2dna_core.signomics.signal method)
DNACodes (class in sig2dna_core.signomics)
DNAFullCodes (class in sig2dna_core.signomics)
DNApairwiseAnalysis (class in sig2dna_core.signomics)
DNAsignal (class in sig2dna_core.signomics)
DNAsignal_collection (class in sig2dna_core.signomics)
DNAsignals (sig2dna_core.signomics.DNApairwiseAnalysis attribute)
DNAstr (class in sig2dna_core.signomics)
dtype (sig2dna_core.signomics.DNAsignal attribute)
(sig2dna_core.signomics.SinusoidalEncoder attribute)
dx (sig2dna_core.signomics.DNAsignal attribute)
(sig2dna_core.signomics.DNAstr attribute)
E
E_symbol (sig2dna_core.signomics.DNAsignal_collection property)
enable_fullhistory() (sig2dna_core.signomics.signal method)
encode() (sig2dna_core.signomics.SinusoidalEncoder method)
,
[1]
encode_dna() (sig2dna_core.signomics.DNAsignal method)
,
[1]
,
[2]
encode_dna_full() (sig2dna_core.signomics.DNAsignal method)
,
[1]
,
[2]
encoded (sig2dna_core.signomics.DNACodes attribute)
(sig2dna_core.signomics.DNAFullCodes attribute)
engine (sig2dna_core.signomics.DNAstr attribute)
engineOpts (sig2dna_core.signomics.DNAstr attribute)
entropy (sig2dna_core.signomics.DNAstr property)
entropy_from_string() (sig2dna_core.signomics.DNAsignal static method)
Example() (sig2dna_core.signomics.SinusoidalEncoder method)
,
[1]
excess_entropy() (sig2dna_core.signomics.DNAstr method)
extract_motifs() (sig2dna_core.signomics.DNAstr method)
F
find() (sig2dna_core.signomics.DNAstr method)
find_sequence() (sig2dna_core.signomics.DNAsignal method)
fit_encoder() (sig2dna_core.signomics.SinusoidalEncoder method)
,
[1]
from_peaks() (sig2dna_core.signomics.signal class method)
G
generate_mixtures() (sig2dna_core.signomics.signal_collection class method)
generate_synthetic() (sig2dna_core.signomics.signal_collection class method)
generator (class in sig2dna_core.signomics)
(sig2dna_core.signomics.DNAsignal attribute)
get_cluster_labels() (sig2dna_core.signomics.DNApairwiseAnalysis method)
get_code() (sig2dna_core.signomics.DNAsignal method)
get_entropy() (sig2dna_core.signomics.DNAsignal method)
group_centroid() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
H
has() (sig2dna_core.signomics.DNAsignal method)
,
[1]
heatmap() (sig2dna_core.signomics.DNApairwiseAnalysis method)
html_alignment() (sig2dna_core.signomics.DNAstr method)
I
iloc (sig2dna_core.signomics.DNAstr attribute)
import_local_module() (in module sig2dna_core.signomics)
J
jaccard() (sig2dna_core.signomics.DNAstr method)
jensen_shannon() (sig2dna_core.signomics.DNAstr method)
L
letters (sig2dna_core.signomics.DNAsignal property)
(sig2dna_core.signomics.DNAsignal_collection attribute)
levenshtein() (sig2dna_core.signomics.DNAstr method)
linkage_matrix (sig2dna_core.signomics.DNApairwiseAnalysis attribute)
load() (sig2dna_core.signomics.DNApairwiseAnalysis static method)
(sig2dna_core.signomics.signal static method)
M
m (sig2dna_core.signomics.DNAsignal_collection attribute)
(sig2dna_core.signomics.DNAsignal_collection property)
mask (sig2dna_core.signomics.DNAstr attribute)
mean() (sig2dna_core.signomics.signal_collection method)
meta (sig2dna_core.signomics.DNACodes attribute)
(sig2dna_core.signomics.DNAFullCodes attribute)
metadata (sig2dna_core.signomics.signal attribute)
module
sig2dna_core.signomics
mutation_counts (sig2dna_core.signomics.DNAstr property)
mutual_entropy() (sig2dna_core.signomics.DNAstr method)
N
n (sig2dna_core.signomics.DNAsignal attribute)
(sig2dna_core.signomics.signal property)
N (sig2dna_core.signomics.SinusoidalEncoder attribute)
name (sig2dna_core.signomics.DNAsignal attribute)
(sig2dna_core.signomics.signal attribute)
names (sig2dna_core.signomics.DNApairwiseAnalysis attribute)
names() (sig2dna_core.signomics.peaks method)
normalize() (sig2dna_core.signomics.signal method)
normalize_signal() (sig2dna_core.signomics.DNAsignal method)
,
[1]
O
other_copy (sig2dna_core.signomics.DNAstr attribute)
P
pairwise_similarity() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
pcoa() (sig2dna_core.signomics.DNApairwiseAnalysis method)
PE_m (sig2dna_core.signomics.DNAsignal_collection property)
PE_t (sig2dna_core.signomics.DNAsignal_collection property)
peaks (class in sig2dna_core.signomics)
(sig2dna_core.signomics.DNAsignal attribute)
phase_alignment() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
phase_unwrap() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
plot() (sig2dna_core.signomics.DNACodes method)
,
[1]
(sig2dna_core.signomics.DNAFullCodes method)
,
[1]
(sig2dna_core.signomics.DNAsignal_collection method)
(sig2dna_core.signomics.signal method)
(sig2dna_core.signomics.signal_collection method)
plot_alignment() (sig2dna_core.signomics.DNAstr method)
plot_codes() (sig2dna_core.signomics.DNAsignal method)
,
[1]
plot_dendrogram() (sig2dna_core.signomics.DNApairwiseAnalysis method)
plot_embedding_projection() (sig2dna_core.signomics.DNAsignal_collection method)
plot_letters() (sig2dna_core.signomics.DNAsignal_collection method)
plot_mask() (sig2dna_core.signomics.DNAstr method)
plot_scalogram() (sig2dna_core.signomics.DNAsignal method)
plot_signals() (sig2dna_core.signomics.DNAsignal method)
,
[1]
plot_transforms() (sig2dna_core.signomics.DNAsignal method)
,
[1]
plot_unwrapped_matrix() (sig2dna_core.signomics.DNAFullCodes method)
,
[1]
plot_v_symbol_components() (sig2dna_core.signomics.DNAsignal_collection method)
plot_vtm_full() (sig2dna_core.signomics.DNAsignal_collection method)
print_alignment() (sig2dna_core.signomics.DNAsignal static method)
pseudoinverse() (sig2dna_core.signomics.DNAsignal method)
R
reconstruct_aligned_string() (sig2dna_core.signomics.DNAsignal static method)
reconstruct_signal() (sig2dna_core.signomics.DNAsignal method)
reduce_dimensions() (sig2dna_core.signomics.DNAsignal_collection method)
reduced_distances() (sig2dna_core.signomics.DNApairwiseAnalysis method)
ref_hash (sig2dna_core.signomics.DNAstr attribute)
References() (sig2dna_core.signomics.SinusoidalEncoder method)
remove_duplicates() (sig2dna_core.signomics.peaks method)
rename() (sig2dna_core.signomics.peaks method)
restore() (sig2dna_core.signomics.signal method)
S
sample() (sig2dna_core.signomics.signal method)
sampling_dt (sig2dna_core.signomics.DNAsignal attribute)
save() (sig2dna_core.signomics.DNApairwiseAnalysis method)
(sig2dna_core.signomics.signal method)
scale_alignment() (sig2dna_core.signomics.DNAsignal_collection method)
scales (sig2dna_core.signomics.DNAsignal attribute)
,
[1]
(sig2dna_core.signomics.DNAsignal_collection attribute)
scatter() (sig2dna_core.signomics.DNApairwiseAnalysis method)
scatter3d() (sig2dna_core.signomics.DNApairwiseAnalysis method)
score() (sig2dna_core.signomics.DNAstr method)
select_dimensions() (sig2dna_core.signomics.DNApairwiseAnalysis method)
set_decode_tolerance() (sig2dna_core.signomics.SinusoidalEncoder method)
,
[1]
sig2dna_core.signomics
module
signal (class in sig2dna_core.signomics)
(sig2dna_core.signomics.DNAsignal attribute)
signal_collection (class in sig2dna_core.signomics)
sincodesfull (sig2dna_core.signomics.DNAsignal attribute)
sincodesfull_aggregated (sig2dna_core.signomics.DNAsignal attribute)
sindecode() (sig2dna_core.signomics.DNACodes method)
,
[1]
(sig2dna_core.signomics.DNAFullCodes method)
,
[1]
sindecode_dna() (sig2dna_core.signomics.DNAsignal method)
(sig2dna_core.signomics.DNAsignal static method)
sindecode_dna_full() (sig2dna_core.signomics.DNAsignal method)
sindecode_dna_grouped() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
sindecode_dnafull_grouped() (sig2dna_core.signomics.SinusoidalEncoder method)
sinencode() (sig2dna_core.signomics.DNACodes method)
,
[1]
(sig2dna_core.signomics.DNAFullCodes method)
,
[1]
sinencode_dna() (sig2dna_core.signomics.DNAsignal method)
,
[1]
sinencode_dna_full() (sig2dna_core.signomics.DNAsignal method)
,
[1]
(sig2dna_core.signomics.DNAsignal_collection method)
sinencode_dna_grouped() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
sinencode_dnafull_grouped() (sig2dna_core.signomics.SinusoidalEncoder method)
SinusoidalEncoder (class in sig2dna_core.signomics)
sort() (sig2dna_core.signomics.peaks method)
source (sig2dna_core.signomics.signal attribute)
sparsify_cwt() (sig2dna_core.signomics.DNAsignal method)
,
[1]
sum() (sig2dna_core.signomics.signal_collection method)
summary() (sig2dna_core.signomics.DNACodes method)
,
[1]
(sig2dna_core.signomics.DNAFullCodes method)
(sig2dna_core.signomics.DNAsignal method)
(sig2dna_core.signomics.DNAstr method)
synthetic_signal() (sig2dna_core.signomics.DNAsignal static method)
T
to_complex() (sig2dna_core.signomics.SinusoidalEncoder method)
(sig2dna_core.signomics.SinusoidalEncoder static method)
to_dataframe() (sig2dna_core.signomics.DNAsignal_collection method)
to_matrix() (sig2dna_core.signomics.signal_collection method)
to_signal() (sig2dna_core.signomics.DNAstr method)
(sig2dna_core.signomics.peaks method)
tosignal() (sig2dna_core.signomics.DNAsignal method)
,
[1]
transforms (sig2dna_core.signomics.DNAsignal attribute)
type (sig2dna_core.signomics.signal attribute)
U
unwrap_letters_to_matrix() (sig2dna_core.signomics.DNAFullCodes method)
,
[1]
unwrapped_matrix (sig2dna_core.signomics.DNAFullCodes attribute)
update() (sig2dna_core.signomics.peaks method)
V
vectorized() (sig2dna_core.signomics.DNAstr method)
verify_roundtrip() (sig2dna_core.signomics.SinusoidalEncoder method)
,
[1]
vtm (sig2dna_core.signomics.DNAsignal_collection property)
vtm_full (sig2dna_core.signomics.DNAsignal_collection property)
W
wrapped_alignment() (sig2dna_core.signomics.DNAstr method)
X
x (sig2dna_core.signomics.signal attribute)
x_label (sig2dna_core.signomics.DNAsignal attribute)
(sig2dna_core.signomics.signal attribute)
x_unit (sig2dna_core.signomics.DNAsignal attribute)
(sig2dna_core.signomics.signal attribute)
xloc (sig2dna_core.signomics.DNAstr attribute)
Y
y (sig2dna_core.signomics.signal attribute)
y_label (sig2dna_core.signomics.DNAsignal attribute)
y_unit (sig2dna_core.signomics.DNAsignal attribute)